Research

Academia & Publications

27 published studies spanning inflammatory bowel disease, liver disease, endoscopy, and clinical epidemiology — from my time at Hadassah–Hebrew University to my advanced IBD fellowship at the University of Chicago. Studies most relevant to gastroenterology and liver disease are highlighted.

Dr. Shafrir presenting research at a scientific conference
GI / Liver Research marks studies most directly related to gastroenterology, IBD, or liver disease.

Efficacy and Safety of Guselkumab in Patients with Crohn's Disease and Ulcerative Colitis: A Prospective Real-World Study

Shafrir A, Choi D, Capucci LC, Hannett A, Tanouye J, Mathew AJ, Natt N, et al. · Clinical Gastroenterology and Hepatology, 2026

GI

Prospective real-world study of 234 adults (142 with Crohn's disease, 92 with ulcerative colitis) who started guselkumab at a large tertiary IBD center and were followed for up to a year. About 77% of Crohn's and 81% of ulcerative colitis patients were in clinical remission at week 12, remission was maintained at six months in roughly 85–88%, and adverse events were mostly mild — a safety profile similar to the pivotal trials.

Read the study

Combining Guselkumab with Upadacitinib Is Safe and Effective in the Treatment of Medically Complex Inflammatory Bowel Disease

Natt N, Choi D, Shafrir A, et al. · Digestive Diseases and Sciences, 2026

GI

Real-world data from the University of Chicago's IBD center on combining two advanced therapies — guselkumab and upadacitinib — in patients with treatment-refractory IBD, part of an emerging "advanced combination therapy" strategy for the hardest-to-treat cases.

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Transition to Subcutaneous Vedolizumab Is Effective and Safe in Adults with IBD in Clinical Remission, Including Those on Dose-Escalated Intravenous Vedolizumab

Natt N, Shafrir A, Fine Z, et al. · Journal of the Canadian Association of Gastroenterology, 2026

GI

Prospective cohort of 86 patients in clinical remission who switched from intravenous to subcutaneous vedolizumab, including those on dose-escalated IV dosing. One-year treatment persistence was 82.6% with no significant difference between standard and dose-escalated groups, and 97.5% of patients in remission at baseline were still in remission at one year.

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A Feasibility Study of a Monitored Home Program to Increase Walking and Decrease Frailty in Cirrhotic Patients

Milgrom Y, Sharif Y, Milgrom C, Shafrir A, Safadi R · Canadian Liver Journal, 2026

GI

Pilot study testing whether a remotely monitored home walking program can reduce frailty in patients with cirrhosis — an early step toward practical, low-cost interventions for a population in which frailty strongly predicts poor outcomes.

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Insights from Age-Stratified Endoscopic Detection Metrics Support Initiating Colorectal Cancer Screening at Age 45

Khader M, Delgado J, Artoul R, Shafrir A, Naim A · BMC Gastroenterology, 2025

GI

Analysis of colonoscopy detection rates across age groups supporting current guidelines to begin colorectal cancer screening at age 45 rather than 50, showing meaningful polyp and cancer detection already present in the 45–49 age band.

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Low ALT Is Associated with IBD and Disease Activity: Results from a Nationwide Study

Shafrir A, Katz LH, Shauly-Aharonov M, Zinger A, Safadi R, Stokar J, Kalisky I · Journal of Clinical Medicine, 2024

GI

Nationwide data linking low ALT levels to both an IBD diagnosis and more active disease, proposing ALT — a routine, inexpensive blood test — as a potential low-cost signal of disease activity in Crohn's disease and ulcerative colitis.

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Patients with Low ALT Levels Are at Increased Risk for Severe COVID-19

Genzel D, Katz LH, Safadi R, Rozenberg A, Milgrom Y, Jacobs JM, Shafrir A · Frontiers in Medicine, 2023

GI

Counterintuitively, unusually low (not high) liver enzyme ALT levels — a marker linked to frailty and sarcopenia — predicted higher risk of severe COVID-19, part of this group's broader research into low ALT as an overlooked marker of frailty.

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Ten-Hour Intermittent Fasting Plus Mediterranean Diet Versus Mediterranean Diet Alone for Treatment of Nonalcoholic Fatty Liver Disease (NAFLD)

Milgrom Y, Massarwa M, Hazou W, Shafrir A, et al. · Harefuah, 2024

GI

Israeli clinical study testing whether adding a 10-hour daily eating window to a Mediterranean diet improves fatty liver disease outcomes beyond diet alone, contributing practical, lifestyle-based evidence for NAFLD management.

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Weaker SARS-CoV-2 Vaccine Responses in Nonalcoholic Fatty Liver Disease with Advanced Liver Fibrosis

Hakimian D, Amer J, Jammal A, Shafrir A, et al. · Vaccine: X, 2023

GI

Extends the fibrosis-vaccine-response finding specifically to fatty liver disease, showing that once fibrosis becomes advanced, vaccine antibody response drops meaningfully — reinforcing fibrosis stage, not diagnosis alone, as the key risk marker.

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SARS-CoV-2 Vaccine Alleviates Disease Burden and Severity in Liver Transplant Recipients Even with Low Antibody Titers

Khalaileh A, Imam A, Jammal A, Hakimian D, et al. · Hepatology Communications, 2023

GI

Even when liver transplant recipients produced a weaker antibody response to vaccination, they still experienced significantly milder COVID-19 illness than unvaccinated peers — supporting vaccination in this immunosuppressed population regardless of measured titers.

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The Association Between Proton Pump Inhibitors and COVID-19 Is Confounded by Hyperglycemia in a Population-Based Study

Shafrir A, Benson AA, Katz LH, Hershcovici T, et al. · Frontiers in Pharmacology, 2022

GI

A commonly cited link between acid-suppressing PPI medications and worse COVID-19 outcomes turned out to be explained by elevated blood sugar rather than the drug itself — reassuring for the many patients on long-term PPI therapy.

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Advanced Liver Fibrosis Correlates With Impaired Efficacy of Pfizer-BioNTech COVID-19 Vaccine in Medical Employees

Shafrir A, Amer J, Hakimian D, Milgrom Y, et al. · Hepatology Communications, 2022

GI

In nearly 720 hospital employees, those with advanced liver fibrosis (measured noninvasively via FIB-4) had significantly lower antibody responses to the Pfizer vaccine than those with healthy livers — identifying liver fibrosis as an overlooked risk factor for reduced vaccine protection.

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Elderly with Advanced Liver Fibrosis Had Lower Response to Pfizer's SARS-CoV-2 Vaccine Response

Hakimian D, Shafrir A, Milgrom Y, et al. · Journal of Hepatology (ILC 2021 abstract), 2021

GI

Conference abstract presented at the International Liver Congress 2021, sharing early findings that elderly patients with advanced liver fibrosis mounted a weaker antibody response to the Pfizer COVID-19 vaccine — the work later published in full as the Hepatology Communications paper above.

Related full study

Safety of Oesophagogastroduodenoscopy in a Nonagenarian Population

Ellis R, Livovsky DM, Shapiro DS, Friedmann R, Shafrir A, Goldin E, Koslowsky B · Age and Ageing, 2021

GI

Companion analysis to my earlier colonoscopy work, showing upper endoscopy (OGD) is likewise safe and clinically useful in patients over 90, supporting its use in appropriately selected very elderly patients rather than withholding it by age alone.

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Nonattendance to Gastroenterologist Follow-Up After Discharge Is Associated with a Thirty-Days Re-Admission in Patients with Inflammatory Bowel Disease: A Multicenter Study

Sbeit W, Khoury T, Kadah A, Shahin A, Shafrir A, et al. · Minerva Medica, 2021

GI

Multicenter data showing IBD patients who skipped their post-discharge GI follow-up appointment were significantly more likely to be readmitted within 30 days, underscoring how a simple follow-up visit can prevent a hospital bounce-back.

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The Association Between Serum Vitamin D Levels and Helicobacter pylori Presence and Eradication

Shafrir A, Shauly-Aharonov M, Katz LH, Paltiel O, Pickman Y, Ackerman Z · Nutrients, 2021

GI

Large HMO database study of over 27,000 patients finding that lower vitamin D levels were associated with a higher likelihood of testing positive for H. pylori and with lower eradication success after treatment.

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Unawareness of Thromboprophylaxis Is Associated with Low Venous Thromboembolism Occurrence in Hospitalized Patients with Acute Inflammatory Bowel Disease Flare

Sbeit W, Kadah A, Shafrir A, Kalisky I, et al. · Minerva Medica, 2020

GI

Multicenter study finding that many hospitalized IBD flare patients did not receive guideline-recommended blood clot prevention, yet clot rates stayed low — highlighting a gap between guidelines and practice and raising questions about who truly needs prophylaxis.

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Colonoscopy in Nonagenarians Is Safe and May Be Associated with Clinical Benefit

Shafrir A, Koslowsky B, Wengrower D, Goldin E, Livovsky DM · Journal of the American Geriatrics Society, 2019

GI

Retrospective review of colonoscopies performed on patients aged 90 and older, showing the procedure is safe in this population and often changes management — for example detecting cancer or controlling bleeding — despite being underused due to age-related caution.

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Low ALT Levels and a New Diagnosis of Congestive Heart Failure Following COVID-19 Infection

Shafrir A, Dagan G, Alcalai R, Leibowitz D · Frontiers in Cardiovascular Medicine, 2025

Extends the low-ALT-as-frailty-marker theme into cardiology: low ALT after COVID-19 infection was associated with new-onset heart failure diagnoses, suggesting shared underlying frailty pathways across organ systems.

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Long Term Outcomes After COVID-19 in Patients with Schizophrenia: A Historical Cohort Study in a Health Maintenance Organization

Dagnaw G, Paltiel O, Shafrir A · Social Psychiatry and Psychiatric Epidemiology, 2025

Large HMO cohort comparing over 1,200 patients with schizophrenia-spectrum disorders to matched controls after COVID-19 infection, finding worse long-term outcomes in this vulnerable population and highlighting the need for closer post-COVID follow-up.

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Pre-Infection Anticoagulant Exposure and SARS-CoV-2 Infection Outcomes – Differential Mortality by Age

Amsalem I, Shafrir A, Kalish Y, Paltiel O · Thrombosis Research, 2025

Found that chronic anticoagulant use before COVID-19 infection was associated with different mortality effects depending on patient age, adding nuance to how pre-existing blood-thinner use should be weighed in COVID-19 risk assessment.

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Real-Life Comparison of Fosfomycin to Nitrofurantoin for the Treatment of Uncomplicated Lower Urinary Tract Infection in Women

Shafrir A, Oster Y, Shauly-Aharonov M, Strahilevitz J · Biomedicines, 2023

Real-world comparison of two commonly used oral antibiotics for uncomplicated UTIs in women, finding comparable clinical effectiveness between single-dose fosfomycin and the standard nitrofurantoin course.

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Both High and Low Pre-Infection Glucose Levels Associated with Increased Risk for Severe COVID-19: New Insights from a Population-Based Study

Shauly-Aharonov M, Shafrir A, Paltiel O, et al. · PLOS ONE, 2021

Population-based study showing a U-shaped relationship between pre-infection blood glucose and COVID-19 severity — both unusually high and unusually low glucose levels beforehand independently predicted worse outcomes.

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Eligibility for Growth Hormone Therapy in Children Born Small for Gestational Age Is Substantially Lower Than Expected

Lavi E, Shafrir A, Halloun R, et al. · Clinical Endocrinology, 2021

Pediatric cohort study finding far fewer children born small-for-gestational-age actually meet criteria for growth hormone therapy than clinicians typically expect, since most catch up in growth on their own in early childhood.

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Myocardial Injury Induced by the Long Acting Beta2 Adrenergic Agonist Clenbuterol

Shafrir A, Leibowitz D, Alcalai R, Elitzur Y, Muszkat M · Cardiology and Cardiovascular Medicine, 2019

A case-based investigation into how clenbuterol, a long-acting beta agonist sometimes misused for weight loss or bodybuilding, can directly injure heart muscle — documented through cardiac injury markers.

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Review Articles

Selected Reviews

S1P Receptors in Ulcerative Colitis: Spotlight on Etrasimod

Shafrir A, Allen A, Rubin DT · Expert Opinion on Pharmacotherapy, 2026

GI

Review of how sphingosine-1-phosphate (S1P) receptor modulators work in ulcerative colitis, with a focus on etrasimod. It covers the approved oral agents (ozanimod and etrasimod) and investigational ones, summarizing efficacy and safety and where they fit — particularly for patients with moderate disease and those moving from conventional to advanced therapy.

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Interrupting Inflammatory Bowel Disease Therapy: Why, Who, When and How to Consider Medication Holidays

St-Pierre J, Shafrir A, Rubin DT · Expert Review of Gastroenterology & Hepatology, 2024

GI

A review examining when IBD medication "holidays" (temporarily stopping therapy) might reasonably be considered, who might be a candidate, and how to weigh the risks — a clinically important question as more IBD patients reach durable remission on advanced therapies.

Read the review

This page covers my published articles. For my complete and most up-to-date list, including posters and conference abstracts, see my Google Scholar profile.

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